Statistical Properties of Protein-Protein Interfaces

نویسنده

  • Mihaly Mezei
چکیده

The properties of 1172 protein complexes (downloaded from the Protein Data Bank (PDB)) have been studied based on the concept of circular variance as a buriedness indicator and the concept of mutual proximity as a parameter-free definition of contact. The propensities of residues to be in the protein, on the surface or form contact, as well as residue pairs to form contact were calculated. In addition, the concept of circular variance has been used to compare the ruggedness and shape of the contact surface with the overall surface.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Study of PKA binding sites in cAMP-signaling pathway using structural protein-protein interaction networks

Backgroud: Protein-protein interaction, plays a key role in signal transduction in signaling pathways. Different approaches are used for prediction of these interactions including experimental and computational approaches. In conventional node-edge protein-protein interaction networks, we can only see which proteins interact but ‘structural networks’ show us how these proteins inter...

متن کامل

Comparison the functional properties of protein Hydrolysates from poultry byproducts and rainbow trout

Poultry by-products and rainbow trout (Onchorhynchus mykiss) viscera are abundant and underutilized resources that can be used as a unique protein source to make protein hydrolysates. In this study protein hydrolysate were made from these two different sources with Alcalase 2.4L. The functional properties of Fish viscera protein hydrolysate (FPH) compared to poultry by-products protein hydrolys...

متن کامل

The Effect of Adding Different Levels of Valine in Low Protein Diets on Performance, Blood Parameters and Tibial Bone Properties of Ross-308 Broiler Chickens from 8-21 Days

Extende Abstract Introduction and Objective: The present research was performed to evaluate the effect of different levels of valine in low protein diets on performance, blood parameters and tibia bone properties of Ross-308 broiler chickens from 8-21 days. Material and Methods: For this purpose, a total of 200 one-day-old male broilers of Ross-308 strain from 8 to 21 days of age in 4 treatm...

متن کامل

Improvement Physical Properties of Pullulan-Whey Protein Biocomposite Films with Nanoclay

In the current study, whey protein- pullulan- clay nanocomposite films are prepared by casting method. The effect of nanoclay at three concentrations (1%, 3% and 5%) on physical properties such as moisture content, solubility in water, water vapor permeability and transparency of whey protein- pullulan composite films investigated. The results show that the effect of nanoparticles on composite ...

متن کامل

Improvement Physical Properties of Pullulan-Whey Protein Biocomposite Films with Nanoclay

In the current study, whey protein- pullulan- clay nanocomposite films are prepared by casting method. The effect of nanoclay at three concentrations (1%, 3% and 5%) on physical properties such as moisture content, solubility in water, water vapor permeability and transparency of whey protein- pullulan composite films investigated. The results show that the effect of nanoparticles on composite ...

متن کامل

Effect of salt and alkaline on the physicochemical properties of the protein isolates extracted from lanternfish (Benthosema pterotum)

The aim of this study was to evaluate the effect of alkaline and NaCl on functional properties of protein isolated from Lanternfish (Benthosema pterotum). In this study, extraction of fish protein was performed at different concentrations of NaCl (0.5%, 1.5%, 3% and 4.5%) at pHs 10 and 12. The results showed alkaline treatment improved the functional properties and the recovery yield of protein...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Algorithms

دوره 8  شماره 

صفحات  -

تاریخ انتشار 2015